I'm not sure what's going on but I only experience this on PC so I'm posting it here.
As you can see in this gif, the bushes in my house don't seem to regenerate on my laptops client yet on my phone it works perfectly fine. The bushes only regenerate if someone not on pc picks them up. Leaving and entering doesn't respawn them either.
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This hadn't happened to me for a while but I think I figured out one of the causes. I was sword farming in my house for 10 minutes just now and everything worked correctly until I hopped on my mount
to make it a bit quicker. If you play on pc and hold down d or f while autofarming on a mount it rapidly eats up all the bushes as you go past them on the conveyor belts. Does it maybe eat them too quickly causing them to bug out?